Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs73220940 chr3:139266988 A/G 4.7E-10 500 31.5 33.98 19.32 KM Plot
THCA rs73220941 chr3:139268285 C/T 4.83E-5 500 31.53 33.97 19.32 KM Plot
THCA rs73220944 chr3:139270783 C/T 3.03E-6 492 31.7 32.37 17.77 KM Plot
THCA rs73225405 chr21:43613428 C/T 8.18E-5 485 31.37 35.02 23.73 KM Plot
THCA rs73230017 chr12:123418231 G/A 1.52E-5 493 31.47 31.9 14.43 KM Plot
THCA rs7330367 chr13:46664574 T/G 5.35E-5 500 27.23 32.43 31.43 KM Plot
THCA rs73324174 chr5:178242869 C/T 3.1E-5 501 31.45 33.97 24.9 KM Plot
THCA rs73330587 chr5:178270857 A/C 3.43E-5 497 31.47 32.9 24.9 KM Plot
THCA rs73341509 chr5:178209375 G/A 3.36E-5 501 31.47 35.72 24.9 KM Plot
THCA rs73341510 chr5:178213985 G/T 3.43E-5 499 31.47 35.72 24.9 KM Plot
THCA rs73341513 chr5:178215622 C/G 3.27E-5 498 31.47 34.4 24.9 KM Plot
THCA rs73341521 chr5:178219322 G/A 3.01E-5 499 31.47 33.97 24.9 KM Plot
THCA rs73341529 chr5:178221916 G/A 2.99E-5 502 31.47 33.97 24.9 KM Plot
THCA rs73341553 chr5:178231677 G/C 3.05E-5 500 31.47 33.97 24.9 KM Plot
THCA rs73360608 chr7:64252273 A/G 9.6E-5 500 31.47 33.2 31.27 KM Plot